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Homo sapiens
5 Downloadable Samples
Illumina HiSeq 2500
Description
RNA-Seq analysis was performed to identify differentially expressed transcripts in primary AML bone marrow derived mononuclear cells compared to healthy (normal) peripheral blood mononuclear cells.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Age, Specimen part, Disease, Disease stage, Race
View Samples- Homo sapiens
- 4 Downloadable Samples
- Illumina HiSeq 4000
Description
We have used lentiviral mediated knock down of SMARCB1, a subunit of the mammalian SWI/SNF complex in HL60, an acute promyelocytic leukemia cell line followed by high throughput mRNA sequencing to identify differentially expressed genes. We have used this data to identify genes affected by SMARCB1 depletion, and thus understand contribution of SMARCB1 towards leukemogenesis.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Age, Specimen part, Cell line
View Samples
SRP095659- Mus musculus
- 1 Downloadable Sample
- Illumina HiSeq 2500
Description
We investigate the molecular mechanisms of the RP9 mutation causing photoreceptor degeneration using the 661w cell
Publication Title
Targeted RP9 ablation and mutagenesis in mouse photoreceptor cells by CRISPR-Cas9.
Sample Metadata Fields
Sex, Specimen part
View Samples SRP095666- Mus musculus
- 1 Downloadable Sample
- Illumina HiSeq 2500
Description
RP9 point mutation of 661w cell
Publication Title
Targeted RP9 ablation and mutagenesis in mouse photoreceptor cells by CRISPR-Cas9.
Sample Metadata Fields
Sex, Specimen part
View Samples SRP095667- Mus musculus
- 1 Downloadable Sample
- Illumina HiSeq 2500
Description
RP9 konck out of 661w cell
Publication Title
Targeted RP9 ablation and mutagenesis in mouse photoreceptor cells by CRISPR-Cas9.
Sample Metadata Fields
Sex, Specimen part
View Samples- Homo sapiens
- 15 Downloadable Samples
- NextSeq 500
Description
The goal of this study is to reveal the characters and therapeutic targets of CNS leukemia.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Age, Specimen part, Disease
View Samples- Mus musculus
- 7 Downloadable Samples
- Illumina HiSeq 2000
Description
Building the gene expression profiles and identifying the differentially expressed genes in specific comparisons.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Mus musculus
- 2 Downloadable Samples
- Illumina HiSeq 2500
Description
RNA-seq of single embryo
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Mus musculus
- 53 Downloadable Samples
Affymetrix Murine Genome U74A Version 2 Array (mgu74av2)
Description
NIH-3T3 cells transduced with either EBF1-, PPARg2- or empty vector were stimulated with hormones to initiate adipocyte differentiation. RNA extraction was done using TriZol at d0, d2, d4 and d10 after stimulation. Samples were handled according to standard affymetrix protocols.
Publication Title
Gene expression analysis suggests that EBF-1 and PPARgamma2 induce adipogenesis of NIH-3T3 cells with similar efficiency and kinetics.
Sample Metadata Fields
No sample metadata fields
View Samples- Homo sapiens
- 29 Downloadable Samples
- Affymetrix Human Gene 1.0 ST Array (hugene10st)
Description
NPTX1 is a key inducer of neural lineages from the human ESC.
Publication Title
NPTX1 regulates neural lineage specification from human pluripotent stem cells.
Sample Metadata Fields
Cell line, Time
View Samples